Here is a list of all class members with links to the classes they belong to:
- o -
- occs
: vg::MinimizerMapper::Minimizer
- of_node()
: vg::Paths
- offset
: vg::GaplessExtension
, vg::PathBranch
, vg::Position
- old_node
: haplo::hDP_gbwt_graph_accessor< GBWTType >
- old_score
: vg::GaplessExtension
- on_group()
: vg::io::MessageEmitter
, vg::io::ProtobufEmitter< T >
- on_message()
: vg::io::ProtobufEmitter< T >
- on_path_edit()
: vg::FeatureSet
- one_end_anchored_filter()
: vg::Filter
- oneof_location
: vg::LocationSupport
- open()
: vg::Index
- open_all()
: vg::StreamSorter< Message >
- open_for_bulk_load()
: vg::Index
- open_for_write()
: vg::Index
- open_read_only()
: vg::Index
- operator Number()
: vg::Range< Number >
- operator Value &()
: vg::BaseOption< Value, Parser >
- operator!=()
: handlegraph::PathForEachSocket::iterator
, vg::BitString
, vg::ChainIterator
, vg::GaplessExtension
, vg::IncrementIter
, vg::io::MessageIterator
, vg::io::ProtobufIterator< T >
, vg::NodeSide
, vg::NodeTraversal
, vg::PhasedGenome::iterator
, vg::ShuffledPairs::iterator
- operator()()
: std::hash< const vg::Snarl >
, std::hash< handlegraph::handle_t >
, std::hash< handlegraph::path_handle_t >
, std::hash< handlegraph::step_handle_t >
, std::hash< pair< A, B > >
, std::hash< std::tuple< TT... > >
, std::hash< vg::NodeSide >
, std::hash< vg::NodeTraversal >
, vg::discrete_distribution< T >
, vg::DistanceHeuristic
, vg::Genotyper::hash_ambiguous_allele_set
, vg::Genotyper::hash_node_traversal
, vg::Genotyper::hash_oriented_edge
, vg::MEMClusterer::DPScoreComparator
, vg::normal_distribution< T >
, vg::SnarlMinDistance
, vg::subcommand::Subcommand
, vg::TipAnchoredMaxDistance
, vg::uniform_int_distribution< T >
, vg::uniform_real_distribution< T >
, vg::wang_hash< handle_t >
, vg::wang_hash< NodeSide >
, vg::wang_hash< NodeTraversal >
, vg::wang_hash< path_handle_t >
, vg::wang_hash< std::pair< A, B > >
, vg::wang_hash< T * >
, vg::wang_hash< T, typename std::enable_if< std::is_integral< T >::value >::type >
, vg::WideningPRNG< PRNG, OutType >
- operator*()
: handlegraph::PathForEachSocket::iterator
, vg::ChainIterator
, vg::IncrementIter
, vg::io::MessageIterator
, vg::io::ProtobufIterator< T >
, vg::PhasedGenome::iterator
, vg::ShuffledPairs::iterator
- operator++()
: handlegraph::PathForEachSocket::iterator
, vg::ChainIterator
, vg::IncrementIter
, vg::io::MessageIterator
, vg::io::ProtobufIterator< T >
, vg::PhasedGenome::iterator
, vg::ShuffledPairs::iterator
- operator+=()
: vg::ReadFilter::Counts
- operator->()
: vg::ChainIterator
- operator<()
: vg::GaplessExtension
, vg::MaximalExactMatch
, vg::MinimizerMapper::Minimizer
, vg::NodeSide
, vg::NodeTraversal
- operator<<
: vg::MaximalExactMatch
- operator=()
: handlegraph::PathForEachSocket::iterator
, vg::AlignmentChainModelVertex
, vg::BaseOption< Value, Parser >
, vg::BitString
, vg::HTSAlignmentEmitter
, vg::IncrementIter
, vg::IndexedVG::CacheEntry
, vg::io::BlockedGzipInputStream
, vg::io::BlockedGzipOutputStream
, vg::io::MessageEmitter
, vg::io::ProtobufEmitter< T >
, vg::io::StreamMultiplexer
, vg::MaximalExactMatch
, vg::MEMChainModelVertex
, vg::Paths
, vg::PhasedGenome::iterator
, vg::PhasedGenome
, vg::Range< Number >
, vg::SnarlManager
, vg::SnarlManager::SnarlRecord
, vg::StreamIndexBase
, vg::VcfBuffer
, vg::VG
, vg::Watchdog
, vg::WindowedVcfBuffer
, vg::XdropAligner
- operator==()
: handlegraph::PathForEachSocket::iterator
, vg::BitString
, vg::ChainIterator
, vg::GaplessExtension
, vg::IncrementIter
, vg::io::MessageIterator
, vg::io::ProtobufIterator< T >
, vg::MaximalExactMatch
, vg::NodeSide
, vg::NodeTraversal
, vg::PhasedGenome::iterator
, vg::ShuffledPairs::iterator
- operator[]()
: haplo::gbwt_thread_t
- optimal_score_on_genome()
: vg::PhasedGenome
- optimize()
: handlegraph::MutableHandleGraph
, vg::VG
- Option()
: vg::Option< Value, Parser >
, vg::Option< vector< Item >, Parser >
- option_offsets
: vg::Configurable
- options_by_code
: vg::ConfigurableParser
- order
: vg::XdropAligner::OrderedGraph
- order_length_repeat_hit_max
: vg::MultipathMapper
- oriented_distance()
: vg::OrientedDistanceMeasurer
, vg::PathOrientedDistanceMeasurer
, vg::SnarlOrientedDistanceMeasurer
- OrientedDistanceClusterer()
: vg::OrientedDistanceClusterer
- origin
: vg::MinimizerMapper::Minimizer
- OS
: vg::Version
- other_orientation_timeout
: vg::RepresentativeTraversalFinder
- other_supports
: vg::BREAKPOINT
- out_file
: vg::HTSAlignmentEmitter
, vg::TSVAlignmentEmitter
, vg::VGAlignmentEmitter
- out_mutex
: vg::io::ProtobufEmitter< T >
- out_stream
: vg::GraphCaller
- out_to
: vg::ExtraNodeGraph
- outfile
: vg::Viz
- output
: vg::io::hFILE_cppstream
- output_in_progress
: vg::Funnel
- output_is_bgzf
: vg::HTSAlignmentEmitter
- output_names
: Vectorizer
- output_png
: vg::Viz
- output_svg
: vg::Viz
- output_tabbed
: Vectorizer
- output_variants
: vg::VCFOutputCaller
- output_vcf
: vg::VCFOutputCaller
- OUTPUT_VERSION
: vg::StreamIndexBase
- output_wabbit_map()
: Vectorizer
- outvcf
: vg::Deconstructor
- over_directed_edge()
: vg::Paths
- over_edge()
: vg::Paths
- overall_support
: vg::Locus
- overflow()
: vg::io::fdoutbuf
- overlap()
: vg::BREAKPOINT
, vg::Edge
- overlapping_refs
: vg::SRPE
- overlay()
: vg::Translator
- overlay_node_translations()
: vg::VG