vg
tools for working with variation graphs
src
src Directory Reference
Directories
directory
subcommand
directory
unittest
Files
file
aligner.cpp
file
aligner.hpp
file
alignment.cpp
file
alignment.hpp
file
alignment_emitter.cpp
file
alignment_emitter.hpp
file
annotation.hpp
file
augment.cpp
file
augment.hpp
file
banded_global_aligner.cpp
file
banded_global_aligner.hpp
file
benchmark.cpp
file
benchmark.hpp
file
bin2ascii.h
file
build_index.cpp
file
build_index.hpp
file
cactus.cpp
file
cactus.hpp
file
chunker.cpp
file
chunker.hpp
file
cluster.cpp
file
cluster.hpp
file
colors.hpp
file
constructor.cpp
file
constructor.hpp
file
convert.hpp
file
convert_handle.cpp
file
convert_handle.hpp
file
crash.cpp
file
crash.hpp
file
dagified_graph.cpp
file
dagified_graph.hpp
file
deconstructor.cpp
file
deconstructor.hpp
file
edit.cpp
file
edit.hpp
file
endianness.hpp
file
entropy.cpp
file
entropy.hpp
file
extra_node_graph.cpp
file
extra_node_graph.hpp
file
feature_set.cpp
file
feature_set.hpp
file
filter.cpp
file
filter.hpp
file
flow_sort.cpp
file
flow_sort.hpp
file
funnel.cpp
file
funnel.hpp
file
gapless_extender.cpp
file
gapless_extender.hpp
file
gbwt_helper.cpp
file
gbwt_helper.hpp
file
genome_state.cpp
file
genome_state.hpp
file
genotypekit.cpp
file
genotypekit.hpp
file
genotyper.cpp
file
genotyper.hpp
file
gfa.cpp
file
gfa.hpp
file
gff_reader.cpp
file
gff_reader.hpp
file
graph.cpp
file
graph.hpp
file
graph_caller.cpp
file
graph_caller.hpp
file
graph_synchronizer.cpp
file
graph_synchronizer.hpp
file
handle.hpp
file
haplotype_extracter.cpp
file
haplotype_extracter.hpp
file
haplotypes.cpp
file
haplotypes.hpp
file
hash_map.hpp
file
homogenizer.cpp
file
homogenizer.hpp
file
identity_overlay.cpp
file
identity_overlay.hpp
file
index.cpp
file
index.hpp
file
indexed_vg.cpp
file
indexed_vg.hpp
file
json2pb.cpp
file
json2pb.h
file
kmer.cpp
file
kmer.hpp
file
main.cpp
file
mapper.cpp
file
mapper.hpp
file
mcmc_genotyper.cpp
file
mcmc_genotyper.hpp
file
mem.cpp
file
mem.hpp
file
memoizing_graph.cpp
file
memoizing_graph.hpp
file
memusage.cpp
file
memusage.hpp
file
min_distance.cpp
file
min_distance.hpp
file
minimizer_mapper.cpp
file
minimizer_mapper.hpp
file
msa_converter.cpp
file
msa_converter.hpp
file
multipath_alignment.cpp
file
multipath_alignment.hpp
file
multipath_alignment_graph.cpp
file
multipath_alignment_graph.hpp
file
multipath_mapper.cpp
file
multipath_mapper.hpp
file
name_mapper.cpp
file
name_mapper.hpp
file
nested_traversal_finder.cpp
file
nested_traversal_finder.hpp
file
nodeside.hpp
file
nodetraversal.hpp
file
null_masking_graph.cpp
file
null_masking_graph.hpp
file
option.cpp
file
option.hpp
file
packer.cpp
file
packer.hpp
file
path.cpp
file
path.hpp
file
path_component_index.cpp
file
path_component_index.hpp
file
path_index.cpp
file
path_index.hpp
file
path_subgraph.cpp
file
path_subgraph.hpp
file
phase_unfolder.cpp
file
phase_unfolder.hpp
file
phased_genome.cpp
file
phased_genome.hpp
file
pictographs.hpp
file
position.cpp
file
position.hpp
file
preflight.cpp
file
preflight.hpp
file
progressive.cpp
file
progressive.hpp
file
proto_handle_graph.cpp
file
proto_handle_graph.hpp
file
prune.cpp
file
prune.hpp
file
rare_variant_simplifier.cpp
file
rare_variant_simplifier.hpp
file
readfilter.cpp
file
readfilter.hpp
file
region.cpp
file
region.hpp
file
region_expander.cpp
file
region_expander.hpp
file
reverse_graph.cpp
file
reverse_graph.hpp
file
sampler.cpp
file
sampler.hpp
file
scanner.cpp
file
scanner.hpp
file
seed_clusterer.cpp
file
seed_clusterer.hpp
file
small_snarl_simplifier.cpp
file
small_snarl_simplifier.hpp
file
snarl_caller.cpp
file
snarl_caller.hpp
file
snarls.cpp
file
snarls.hpp
file
source_sink_overlay.cpp
file
source_sink_overlay.hpp
file
split_strand_graph.cpp
file
split_strand_graph.hpp
file
srpe.cpp
file
srpe.hpp
file
ssw_aligner.cpp
file
ssw_aligner.hpp
file
statistics.cpp
file
statistics.hpp
file
stream_index.cpp
file
stream_index.hpp
file
stream_sorter.cpp
file
stream_sorter.hpp
file
subgraph.cpp
file
subgraph.hpp
file
subgraph_overlay.cpp
file
subgraph_overlay.hpp
file
surjector.cpp
file
surjector.hpp
file
swap_remove.hpp
file
transcriptome.cpp
file
transcriptome.hpp
file
translator.cpp
file
translator.hpp
file
traversal_finder.cpp
file
traversal_finder.hpp
file
traversal_support.cpp
file
traversal_support.hpp
file
tree_subgraph.cpp
file
tree_subgraph.hpp
file
types.hpp
file
utility.cpp
file
utility.hpp
file
variant_adder.cpp
file
variant_adder.hpp
file
variant_recall.cpp
file
variant_recall.hpp
file
vcf_buffer.cpp
file
vcf_buffer.hpp
file
vectorizer.cpp
file
vectorizer.hpp
file
version.cpp
file
version.hpp
file
vg.cpp
file
vg.hpp
file
vg_set.cpp
file
vg_set.hpp
file
viz.cpp
file
viz.hpp
file
wang_hash.hpp
file
watchdog.cpp
file
watchdog.hpp
file
xdrop_aligner.cpp
file
xdrop_aligner.hpp
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