vg
tools for working with variation graphs
Classes | Namespaces | Functions
gfa.cpp File Reference
#include "gfa.hpp"
#include <gfakluge.hpp>
#include <stPinchGraphs.h>
#include <structures/union_find.hpp>

Classes

class  vg::GFAToPinchTranslator
 
class  vg::PinchToVGTranslator
 

Namespaces

 vg
 

Functions

bool vg::stPinchSegment_getBlockOrientationSafe (stPinchSegment *segment)
 Get the segment's orientation in its block (false=backward, true=forward), or true (forward) if there is no block. More...
 
bool vg::gfa_to_graph (istream &in, VG *graph, bool only_perfect_match)
 
void vg::graph_to_gfa (const VG *graph, ostream &out)
 Export the given VG graph to the given GFA file. More...