vg
tools for working with variation graphs
- n -
n_bins :
vg::Packer
n_iterations :
vg::MCMCGenotyper
name :
vg::Alignment
,
vg::BenchmarkResult
,
vg::BREAKPOINT
,
vg::Funnel::Stage
,
vg::Index
,
vg::Locus
,
vg::MultipathAlignment
,
vg::Node
,
vg::Path
,
vg::Position
,
vg::Snarl
,
vg::SnarlTraversal
,
vg::subcommand::Subcommand
,
vg::Transcript
,
vg::TranscriptPath
,
vg::VG
,
vg::VG::Plan
name_prefixes :
vg::ReadFilter
name_to_aln :
vg::SRPE
name_to_id :
vg::Paths
net_graphs :
vg::GenomeState
net_node_lanes :
vg::SnarlState
new_node :
haplo::hDP_gbwt_graph_accessor< GBWTType >
next :
vg::PathBranch
,
vg::PhasedGenome::HaplotypeNode
,
vg::Subpath
next_char :
vg::kmer_t
next_chars :
vg::KmerPosition
next_cost :
vg::AlignmentChainModelVertex
,
vg::MEMChainModelVertex
next_group :
vg::IndexedVG::CacheEntry
next_nonce :
vg::Index
next_pos :
vg::kmer_t
next_positions :
vg::KmerPosition
next_unused :
vg::GFAToPinchTranslator
,
vg::PinchToVGTranslator
no_Ns :
vg::Sampler
node :
vg::BandedGlobalAligner< IntType >::BAMatrix
,
vg::CactusSide
,
vg::Graph
,
vg::NodeSide
,
vg::NodeTraversal
node_by_id :
vg::VG
node_cache :
vg::NGSSimulator
,
vg::Sampler
node_count :
vg::DagifiedGraph
node_id :
vg::KmerMatch
,
vg::LocationSupport
,
vg::NodePileup
,
vg::Position
,
vg::SnarlSeedClusterer::NetgraphNode
,
vg::Visit
node_id_to_idx :
vg::BandedGlobalAligner< IntType >
node_index :
vg::VG
,
vg::XdropAligner::graph_pos_s
node_length :
vg::SourceSinkOverlay
node_lengths :
haplo::gbwt_thread_t
node_locations :
vg::PhasedGenome
node_mapping :
vg::Paths
node_mappings :
vg::BandedGlobalAligner< IntType >::BABuilder
node_occurrences :
vg::PathIndex
node_pileups :
vg::Pileup
node_pos :
vg::DepthMap
node_subset :
vg::SubgraphOverlay
node_supports :
vg::SupportAugmentedGraph
node_to_position :
vg::Filter
node_to_seeds :
vg::SnarlSeedClusterer::TreeState
node_to_variant :
vg::VCFTraversalFinder
node_traversal :
vg::PhasedGenome::HaplotypeNode
node_type :
vg::SnarlSeedClusterer::NetgraphNode
nodes :
haplo::gbwt_thread_t
,
vg::FlowSort::Growth
,
vg::MaximalExactMatch
,
vg::MEMClusterer::DPScoreComparator
,
vg::MEMClusterer::HitGraph
nonce :
vg::Sampler
normal_aligners :
vg::Genotyper
normal_supports :
vg::BREAKPOINT
nt_table :
vg::GSSWAligner
num_alt_alns :
vg::MultipathMapper
num_bases :
vg::BasePileup
num_bases_dynamic :
vg::Packer
num_edges_dynamic :
vg::Packer
num_forward_reads :
vg::EdgePileup
num_items :
vg::ShuffledPairs
num_mapping_attempts :
vg::MultipathMapper
num_nodes :
vg::MinimumDistanceIndex::SnarlIndex
num_null_nodes :
vg::NullMaskingGraph
num_pairs :
vg::ShuffledPairs
num_reads :
vg::EdgePileup
num_threads :
vg::Transcriptome
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