average_node_support_switch_threshold | vg::TraversalSupportFinder | protected |
average_traversal_support_switch_threshold | vg::TraversalSupportFinder | protected |
avg_node_support_cache | vg::CachedPackedTraversalSupportFinder | mutableprotected |
CachedPackedTraversalSupportFinder(const Packer &packer, SnarlManager &snarl_manager, size_t cache_size=100000) | vg::CachedPackedTraversalSupportFinder | |
edge_support_cache | vg::CachedPackedTraversalSupportFinder | mutableprotected |
get_average_traversal_support_switch_threshold() const | vg::TraversalSupportFinder | virtual |
get_avg_node_support(id_t node) const | vg::CachedPackedTraversalSupportFinder | virtual |
get_child_support(const Snarl &snarl) const | vg::TraversalSupportFinder | virtual |
get_edge_length(const edge_t &edge, const unordered_map< id_t, size_t > &ref_offsets) const | vg::TraversalSupportFinder | virtual |
get_edge_support(id_t from, bool from_reverse, id_t to, bool to_reverse) const | vg::CachedPackedTraversalSupportFinder | virtual |
vg::PackedTraversalSupportFinder::get_edge_support(const edge_t &edge) const | vg::PackedTraversalSupportFinder | virtual |
get_min_node_support(id_t node) const | vg::CachedPackedTraversalSupportFinder | virtual |
get_ref_offsets(const SnarlTraversal &ref_trav) const | vg::TraversalSupportFinder | |
get_traversal_genotype_support(const vector< SnarlTraversal > &traversals, const vector< int > &genotype, const set< int > &other_trav_subset, int ref_trav_idx=-1) | vg::TraversalSupportFinder | virtual |
get_traversal_set_support(const vector< SnarlTraversal > &traversals, const vector< int > &shared_travs, const set< int > &tgt_travs, bool exclusive_only, const vector< Support > &exclusive_count_support, bool mutual_shared, int ref_trav_idx=-1) const | vg::TraversalSupportFinder | virtual |
get_traversal_sizes(const vector< SnarlTraversal > &traversals) const | vg::TraversalSupportFinder | virtual |
get_traversal_support(const SnarlTraversal &traversal) const | vg::TraversalSupportFinder | virtual |
graph | vg::TraversalSupportFinder | protected |
min_node_support_cache | vg::CachedPackedTraversalSupportFinder | mutableprotected |
PackedTraversalSupportFinder(const Packer &packer, SnarlManager &snarl_manager) | vg::PackedTraversalSupportFinder | |
packer | vg::PackedTraversalSupportFinder | protected |
snarl_manager | vg::TraversalSupportFinder | protected |
support_val(const Support &support) | vg::TraversalSupportFinder | inlinestatic |
TraversalSupportFinder(const PathHandleGraph &graph, SnarlManager &snarl_manager) | vg::TraversalSupportFinder | |
~CachedPackedTraversalSupportFinder() | vg::CachedPackedTraversalSupportFinder | virtual |
~PackedTraversalSupportFinder() | vg::PackedTraversalSupportFinder | virtual |
~TraversalSupportFinder() | vg::TraversalSupportFinder | virtual |