Packages

• org.biojava.nbio.aaproperties
• org.biojava.nbio.aaproperties.profeat
• org.biojava.nbio.aaproperties.profeat.convertor
• org.biojava.nbio.aaproperties.xml
• org.biojava.nbio.alignment
• org.biojava.nbio.alignment.aaindex
• org.biojava.nbio.alignment.io
• org.biojava.nbio.alignment.routines
• org.biojava.nbio.alignment.template
• org.biojava.nbio.core.exceptions
• org.biojava.nbio.core.sequence
• org.biojava.nbio.core.sequence.compound
• org.biojava.nbio.core.sequence.edits
• org.biojava.nbio.core.sequence.features
• org.biojava.nbio.core.sequence.io
• org.biojava.nbio.core.sequence.io.template
• org.biojava.nbio.core.sequence.io.util
• org.biojava.nbio.core.sequence.loader
• org.biojava.nbio.core.sequence.location
• org.biojava.nbio.core.sequence.location.template
• org.biojava.nbio.core.sequence.storage
• org.biojava.nbio.core.sequence.template
• org.biojava.nbio.core.sequence.transcription
• org.biojava.nbio.core.sequence.views
• org.biojava.nbio.core.util
• org.biojava.nbio.data.sequence
• org.biojava.nbio.genome
• org.biojava.nbio.genome.homology
• org.biojava.nbio.genome.parsers.cytoband
• org.biojava.nbio.genome.parsers.geneid
• org.biojava.nbio.genome.parsers.genename
• org.biojava.nbio.genome.parsers.gff
• org.biojava.nbio.genome.parsers.twobit
• org.biojava.nbio.genome.query
• org.biojava.nbio.genome.uniprot
• org.biojava.nbio.genome.util
• org.biojava.nbio.ontology
• org.biojava.nbio.ontology.io
• org.biojava.nbio.ontology.obo
• org.biojava.nbio.ontology.utils
• org.biojava.nbio.phosphosite
• org.biojava.nbio.phylo
• org.biojava.nbio.proteincomparisontool
• org.biojava.nbio.protmod
• org.biojava.nbio.protmod.io
• org.biojava.nbio.protmod.structure
• org.biojava.nbio.ronn
• org.biojava.nbio.sequencing.io.fastq
• org.biojava.nbio.structure
• org.biojava.nbio.structure.align
• org.biojava.nbio.structure.align.ce
• org.biojava.nbio.structure.align.cemc
• org.biojava.nbio.structure.align.client
• org.biojava.nbio.structure.align.events
• org.biojava.nbio.structure.align.fatcat
• org.biojava.nbio.structure.align.fatcat.calc
• org.biojava.nbio.structure.align.gui
• org.biojava.nbio.structure.align.gui.aligpanel
• org.biojava.nbio.structure.align.gui.autosuggest
• org.biojava.nbio.structure.align.gui.jmol
• org.biojava.nbio.structure.align.helper
• org.biojava.nbio.structure.align.model
• org.biojava.nbio.structure.align.multiple
• org.biojava.nbio.structure.align.pairwise
• org.biojava.nbio.structure.align.seq
• org.biojava.nbio.structure.align.util
• org.biojava.nbio.structure.align.webstart
• org.biojava.nbio.structure.align.xml
• org.biojava.nbio.structure.asa
• org.biojava.nbio.structure.cath
• org.biojava.nbio.structure.contact
• org.biojava.nbio.structure.domain
• org.biojava.nbio.structure.domain.pdp
• org.biojava.nbio.structure.ecod
• org.biojava.nbio.structure.gui
• org.biojava.nbio.structure.gui.events
• org.biojava.nbio.structure.gui.util
• org.biojava.nbio.structure.gui.util.color
• org.biojava.nbio.structure.io
• org.biojava.nbio.structure.io.mmcif
• org.biojava.nbio.structure.io.mmcif.chem
• org.biojava.nbio.structure.io.mmcif.model
• org.biojava.nbio.structure.io.sifts
• org.biojava.nbio.structure.io.util
• org.biojava.nbio.structure.jama
• org.biojava.nbio.structure.math
• org.biojava.nbio.structure.quaternary
• org.biojava.nbio.structure.quaternary.io
• org.biojava.nbio.structure.rcsb
• org.biojava.nbio.structure.scop
• org.biojava.nbio.structure.scop.server
• org.biojava.nbio.structure.secstruc
• org.biojava.nbio.structure.symmetry.analysis
• org.biojava.nbio.structure.symmetry.core
• org.biojava.nbio.structure.symmetry.geometry
• org.biojava.nbio.structure.symmetry.jmolScript
• org.biojava.nbio.structure.symmetry.misc
• org.biojava.nbio.structure.symmetry.utils
• org.biojava.nbio.structure.validation
• org.biojava.nbio.structure.xtal
• org.biojava.nbio.structure.xtal.io
• org.biojava.nbio.survival.cox
• org.biojava.nbio.survival.cox.comparators
• org.biojava.nbio.survival.cox.matrix
• org.biojava.nbio.survival.cox.stats
• org.biojava.nbio.survival.data
• org.biojava.nbio.survival.kaplanmeier.figure
• org.biojava.nbio.survival.kaplanmeier.metadata
• org.biojava.nbio.ws.alignment
• org.biojava.nbio.ws.alignment.qblast
• org.biojava.nbio.ws.hmmer
• org.forester.analysis
• org.forester.application
• org.forester.archaeopteryx
• org.forester.archaeopteryx.phylogeny.data
• org.forester.archaeopteryx.tools
• org.forester.archaeopteryx.webservices
• org.forester.datastructures
• org.forester.development
• org.forester.evoinference
• org.forester.evoinference.distance
• org.forester.evoinference.matrix.character
• org.forester.evoinference.matrix.distance
• org.forester.evoinference.parsimony
• org.forester.evoinference.tools
• org.forester.go
• org.forester.go.etc
• org.forester.io.parsers
• org.forester.io.parsers.nexus
• org.forester.io.parsers.nhx
• org.forester.io.parsers.phyloxml
• org.forester.io.parsers.phyloxml.data
• org.forester.io.parsers.tol
• org.forester.io.parsers.util
• org.forester.io.writers
• org.forester.msa
• org.forester.pccx
• org.forester.phylogeny
• org.forester.phylogeny.data
• org.forester.phylogeny.factories
• org.forester.phylogeny.iterators
• org.forester.protein
• org.forester.sdi
• org.forester.sequence
• org.forester.species
• org.forester.surfacing
• org.forester.test
• org.forester.test.examples
• org.forester.tools
• org.forester.util
• org.forester.ws.hmmer
• org.forester.ws.seqdb
• org.forester.ws.uniprot
• org.forester.ws.wabi
• org.jcolorbrewer
• org.jcolorbrewer.ui