public final class Mafft extends java.lang.Object implements MsaInferrer
Modifier and Type | Method and Description |
---|---|
java.lang.Object |
clone() |
static MsaInferrer |
createInstance() |
static MsaInferrer |
createInstance(java.lang.String path_to_prg) |
static java.lang.String |
getDefaultParameters() |
java.lang.String |
getErrorDescription() |
int |
getExitCode() |
Msa |
infer(java.io.File path_to_input_seqs,
java.util.List<java.lang.String> opts) |
static boolean |
isInstalled() |
public static MsaInferrer createInstance() throws java.io.IOException
java.io.IOException
public static MsaInferrer createInstance(java.lang.String path_to_prg) throws java.io.IOException
java.io.IOException
public static boolean isInstalled()
public static java.lang.String getDefaultParameters()
public java.lang.Object clone()
clone
in class java.lang.Object
public java.lang.String getErrorDescription()
getErrorDescription
in interface MsaInferrer
public int getExitCode()
getExitCode
in interface MsaInferrer
public Msa infer(java.io.File path_to_input_seqs, java.util.List<java.lang.String> opts) throws java.io.IOException, java.lang.InterruptedException
infer
in interface MsaInferrer
java.io.IOException
java.lang.InterruptedException